Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Gm6745-201ENSMUST00000199216 526 ntBASIC15.32■□□□□ 0.04
Smc1aQ9CU62 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Gm10305-201ENSMUST00000195331 2475 ntBASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Smc1aQ9CU62 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Gm9726-201ENSMUST00000180321 678 ntBASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Gm43433-201ENSMUST00000196573 481 ntBASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Gm45195-201ENSMUST00000205597 1008 ntBASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Gm20632-201ENSMUST00000176760 2427 ntBASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1aQ9CU62 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Gm23984-201ENSMUST00000157139 203 ntBASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Gm4691-201ENSMUST00000182339 1000 ntBASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Gm2451-201ENSMUST00000199447 999 ntBASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Gm10290-201ENSMUST00000200451 999 ntBASIC15.3■□□□□ 0.04
Smc1aQ9CU62 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms