Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msh4Q99MT2 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msh4Q99MT2 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msh4Q99MT2 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msh4Q99MT2 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Msh4Q99MT2 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msh4Q99MT2 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC13.33□□□□□ -0.28
Msh4Q99MT2 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Gm15460-201ENSMUST00000118147 391 ntBASIC13.33□□□□□ -0.28
Msh4Q99MT2 Gm15321-201ENSMUST00000121290 288 ntBASIC13.33□□□□□ -0.28
Msh4Q99MT2 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Gm44855-201ENSMUST00000205725 362 ntBASIC13.33□□□□□ -0.28
Msh4Q99MT2 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Gm3365-201ENSMUST00000216296 1480 ntBASIC13.33□□□□□ -0.28
Msh4Q99MT2 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msh4Q99MT2 Syt7-205ENSMUST00000224135 1557 ntBASIC13.32□□□□□ -0.28
Msh4Q99MT2 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.32□□□□□ -0.28
Msh4Q99MT2 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Gm9109-201ENSMUST00000120254 1405 ntBASIC13.32□□□□□ -0.28
Msh4Q99MT2 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Grk6-205ENSMUST00000224653 2976 ntBASIC13.32□□□□□ -0.28
Msh4Q99MT2 Gm20445-201ENSMUST00000061905 565 ntBASIC13.32□□□□□ -0.28
Msh4Q99MT2 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msh4Q99MT2 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Gm15393-201ENSMUST00000120499 219 ntBASIC13.31□□□□□ -0.28
Msh4Q99MT2 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC13.31□□□□□ -0.28
Msh4Q99MT2 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Gm9522-201ENSMUST00000182394 926 ntBASIC13.31□□□□□ -0.28
Msh4Q99MT2 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msh4Q99MT2 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms