Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 AC154687.2-201ENSMUST00000223853 640 ntBASIC15.33■□□□□ 0.04
Ushbp1Q8R370 AC166997.1-201ENSMUST00000225122 572 ntBASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Gm9899-201ENSMUST00000065519 555 ntBASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Gm4804-201ENSMUST00000182234 999 ntBASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 AC165157.4-201ENSMUST00000220587 139 ntBASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Gm14752-201ENSMUST00000120719 2075 ntBASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ushbp1Q8R370 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 CT030684.3-201ENSMUST00000227308 2445 ntBASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Gm12585-201ENSMUST00000117307 290 ntBASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ushbp1Q8R370 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms