Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Il17rd-203ENSMUST00000225146 3366 ntBASIC19.18■□□□□ 0.66
Usp47Q8BY87 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Gm12203-201ENSMUST00000118235 598 ntBASIC19.18■□□□□ 0.66
Usp47Q8BY87 Gm6447-201ENSMUST00000118905 835 ntBASIC19.18■□□□□ 0.66
Usp47Q8BY87 Gm11425-201ENSMUST00000119608 498 ntBASIC19.18■□□□□ 0.66
Usp47Q8BY87 Gm12209-201ENSMUST00000120089 596 ntBASIC19.18■□□□□ 0.66
Usp47Q8BY87 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC19.18■□□□□ 0.66
Usp47Q8BY87 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC19.18■□□□□ 0.66
Usp47Q8BY87 AC122459.1-201ENSMUST00000228373 885 ntBASIC19.18■□□□□ 0.66
Usp47Q8BY87 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Gm9396-201ENSMUST00000076703 567 ntBASIC19.18■□□□□ 0.66
Usp47Q8BY87 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm10729-202ENSMUST00000193403 1375 ntBASIC19.17■□□□□ 0.66
Usp47Q8BY87 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Zscan30-202ENSMUST00000224144 1458 ntBASIC19.17■□□□□ 0.66
Usp47Q8BY87 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm13226-201ENSMUST00000117838 404 ntBASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm15824-201ENSMUST00000119516 955 ntBASIC19.17■□□□□ 0.66
Usp47Q8BY87 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm9124-201ENSMUST00000191789 1092 ntBASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm9113-201ENSMUST00000192510 1018 ntBASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm9131-201ENSMUST00000193557 1089 ntBASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm9121-201ENSMUST00000193749 1071 ntBASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC19.17■□□□□ 0.66
Usp47Q8BY87 AC155237.1-201ENSMUST00000226196 1279 ntBASIC19.17■□□□□ 0.66
Usp47Q8BY87 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC19.17■□□□□ 0.66
Usp47Q8BY87 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Usp47Q8BY87 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Usp47Q8BY87 AC154725.1-201ENSMUST00000224826 1961 ntBASIC19.16■□□□□ 0.66
Usp47Q8BY87 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Gm8835-201ENSMUST00000173096 1169 ntBASIC19.16■□□□□ 0.66
Usp47Q8BY87 Gm27847-201ENSMUST00000183711 107 ntBASIC19.16■□□□□ 0.66
Usp47Q8BY87 Gm27375-201ENSMUST00000183799 107 ntBASIC19.16■□□□□ 0.66
Usp47Q8BY87 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp47Q8BY87 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms