Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Gm5479-201ENSMUST00000160578 435 ntBASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Sh3rf1Q69ZI1 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Gm10305-201ENSMUST00000195331 2475 ntBASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Gm14719-201ENSMUST00000121891 340 ntBASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Gm9719-201ENSMUST00000162765 543 ntBASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Gm27680-201ENSMUST00000184192 160 ntBASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Gm7775-201ENSMUST00000218871 853 ntBASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 AC090659.2-201ENSMUST00000225378 1186 ntBASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Sh3rf1Q69ZI1 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Gm9347-201ENSMUST00000211473 1607 ntBASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Gm28386-201ENSMUST00000189147 1849 ntBASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Gm24543-201ENSMUST00000103867 82 ntBASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 AC124732.1-201ENSMUST00000221551 910 ntBASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Gm9109-201ENSMUST00000120254 1405 ntBASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Sh3rf1Q69ZI1 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Sh3rf1Q69ZI1 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms