Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Gm37259-201ENSMUST00000193903 849 ntBASIC12.41□□□□□ -0.42
Usf1Q61069 Gm4935-201ENSMUST00000221316 1198 ntBASIC12.41□□□□□ -0.42
Usf1Q61069 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Usf1Q61069 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC12.41□□□□□ -0.42
Usf1Q61069 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 AC126549.2-201ENSMUST00000223997 1976 ntBASIC12.41□□□□□ -0.42
Usf1Q61069 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Gm15544-201ENSMUST00000118776 1531 ntBASIC12.41□□□□□ -0.42
Usf1Q61069 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Usf1Q61069 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC12.41□□□□□ -0.42
Usf1Q61069 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Usf1Q61069 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC12.4□□□□□ -0.42
Usf1Q61069 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Usf1Q61069 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
Usf1Q61069 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC12.4□□□□□ -0.42
Usf1Q61069 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Usf1Q61069 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC12.4□□□□□ -0.42
Usf1Q61069 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
Usf1Q61069 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC12.4□□□□□ -0.42
Usf1Q61069 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC12.4□□□□□ -0.42
Usf1Q61069 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC12.4□□□□□ -0.42
Usf1Q61069 Gm43068-201ENSMUST00000201095 1273 ntBASIC12.4□□□□□ -0.42
Usf1Q61069 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC12.4□□□□□ -0.42
Usf1Q61069 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Usf1Q61069 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC12.4□□□□□ -0.42
Usf1Q61069 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Usf1Q61069 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC12.4□□□□□ -0.42
Usf1Q61069 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Usf1Q61069 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
Usf1Q61069 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Usf1Q61069 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Usf1Q61069 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usf1Q61069 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Usf1Q61069 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Usf1Q61069 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Usf1Q61069 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Usf1Q61069 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Usf1Q61069 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Usf1Q61069 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Usf1Q61069 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Usf1Q61069 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Gm15370-201ENSMUST00000117158 253 ntBASIC12.39□□□□□ -0.43
Usf1Q61069 Gm13786-201ENSMUST00000122371 333 ntBASIC12.39□□□□□ -0.43
Usf1Q61069 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.39□□□□□ -0.43
Usf1Q61069 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
Usf1Q61069 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC12.39□□□□□ -0.43
Usf1Q61069 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Gm7029-201ENSMUST00000173226 450 ntBASIC12.39□□□□□ -0.43
Usf1Q61069 Gm2991-201ENSMUST00000173338 480 ntBASIC12.39□□□□□ -0.43
Usf1Q61069 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.39□□□□□ -0.43
Usf1Q61069 Ighv1-62-201ENSMUST00000193406 350 ntBASIC12.39□□□□□ -0.43
Usf1Q61069 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC12.39□□□□□ -0.43
Usf1Q61069 Gm3786-201ENSMUST00000202659 378 ntBASIC12.39□□□□□ -0.43
Usf1Q61069 AC131997.1-201ENSMUST00000228611 1229 ntBASIC12.39□□□□□ -0.43
Usf1Q61069 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Usf1Q61069 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Usf1Q61069 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms