Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Gm9522-201ENSMUST00000182394 926 ntBASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Gm27772-201ENSMUST00000184900 187 ntBASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Gm17795-201ENSMUST00000214505 757 ntBASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Gm3695-201ENSMUST00000087222 1009 ntBASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Ksr1-207ENSMUST00000226282 5260 ntBASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim58Q5NCC9 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Gm37015-201ENSMUST00000192763 1521 ntBASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Gm15487-201ENSMUST00000122373 465 ntBASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Gm21854-201ENSMUST00000179901 471 ntBASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim58Q5NCC9 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Gm6263-201ENSMUST00000120029 1342 ntBASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Gm10710-201ENSMUST00000047876 3971 ntBASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim58Q5NCC9 Gm45242-201ENSMUST00000210666 2129 ntBASIC17.27■□□□□ 0.35
Trim58Q5NCC9 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Trim58Q5NCC9 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim58Q5NCC9 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim58Q5NCC9 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim58Q5NCC9 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Gm4782-201ENSMUST00000168705 2046 ntBASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Gm38037-201ENSMUST00000192600 1624 ntBASIC17.26■□□□□ 0.35
Trim58Q5NCC9 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Gm44065-201ENSMUST00000203184 3527 ntBASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC17.26■□□□□ 0.35
Trim58Q5NCC9 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms