Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Gm18733-201ENSMUST00000173950 856 ntBASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim40Q3UWA4 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Gm26616-202ENSMUST00000195676 3107 ntBASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Gm15957-201ENSMUST00000118893 974 ntBASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Gm14140-201ENSMUST00000119999 995 ntBASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 AC125108.1-201ENSMUST00000218986 2330 ntBASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Syt7-205ENSMUST00000224135 1557 ntBASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim40Q3UWA4 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms