Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Gm38577-201ENSMUST00000221531 4545 ntBASIC11.79□□□□□ -0.52
Nkx3-1P97436 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Nkx3-1P97436 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Gm12384-201ENSMUST00000119228 919 ntBASIC11.78□□□□□ -0.52
Nkx3-1P97436 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Gm8565-201ENSMUST00000183259 1014 ntBASIC11.78□□□□□ -0.52
Nkx3-1P97436 Gm43818-201ENSMUST00000200605 466 ntBASIC11.78□□□□□ -0.52
Nkx3-1P97436 Gm44974-201ENSMUST00000206387 1279 ntBASIC11.78□□□□□ -0.52
Nkx3-1P97436 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC11.78□□□□□ -0.52
Nkx3-1P97436 AC126253.1-201ENSMUST00000227974 824 ntBASIC11.78□□□□□ -0.52
Nkx3-1P97436 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Gm9856-201ENSMUST00000217077 2578 ntBASIC11.78□□□□□ -0.52
Nkx3-1P97436 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC11.78□□□□□ -0.52
Nkx3-1P97436 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC11.78□□□□□ -0.52
Nkx3-1P97436 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
Nkx3-1P97436 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Nkx3-1P97436 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC11.77□□□□□ -0.52
Nkx3-1P97436 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC11.77□□□□□ -0.52
Nkx3-1P97436 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Gm11803-201ENSMUST00000119966 444 ntBASIC11.77□□□□□ -0.53
Nkx3-1P97436 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC11.77□□□□□ -0.53
Nkx3-1P97436 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Gm6152-201ENSMUST00000151704 340 ntBASIC11.77□□□□□ -0.53
Nkx3-1P97436 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC11.77□□□□□ -0.53
Nkx3-1P97436 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC11.77□□□□□ -0.53
Nkx3-1P97436 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms