Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Shox2P70390 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Shox2P70390 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Shox2P70390 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Shox2P70390 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Shox2P70390 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Shox2P70390 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Shox2P70390 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Shox2P70390 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Shox2P70390 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Shox2P70390 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
Shox2P70390 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Shox2P70390 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Nudt18-202ENSMUST00000228554 3619 ntBASIC13.49□□□□□ -0.25
Shox2P70390 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Shox2P70390 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC13.49□□□□□ -0.25
Shox2P70390 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.49□□□□□ -0.25
Shox2P70390 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC13.49□□□□□ -0.25
Shox2P70390 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Shox2P70390 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
Shox2P70390 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Gm42863-201ENSMUST00000197875 2958 ntBASIC13.49□□□□□ -0.25
Shox2P70390 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Shox2P70390 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Shox2P70390 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Shox2P70390 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC13.48□□□□□ -0.25
Shox2P70390 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Shox2P70390 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC13.48□□□□□ -0.25
Shox2P70390 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
Shox2P70390 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC13.48□□□□□ -0.25
Shox2P70390 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Gm42706-201ENSMUST00000199733 1910 ntBASIC13.48□□□□□ -0.25
Shox2P70390 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC13.48□□□□□ -0.25
Shox2P70390 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.48□□□□□ -0.25
Shox2P70390 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Shox2P70390 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.48□□□□□ -0.25
Shox2P70390 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Shox2P70390 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC13.47□□□□□ -0.25
Shox2P70390 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.47□□□□□ -0.25
Shox2P70390 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Shox2P70390 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Shox2P70390 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Shox2P70390 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Shox2P70390 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Shox2P70390 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Shox2P70390 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC13.47□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms