Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
Cux1P53564 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Cux1P53564 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cux1P53564 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Cux1P53564 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cux1P53564 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Cux1P53564 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC20.66■□□□□ 0.9
Cux1P53564 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Cux1P53564 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Gm14704-201ENSMUST00000120300 874 ntBASIC20.65■□□□□ 0.9
Cux1P53564 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Gm44772-201ENSMUST00000207623 1191 ntBASIC20.65■□□□□ 0.9
Cux1P53564 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC20.65■□□□□ 0.9
Cux1P53564 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC20.65■□□□□ 0.9
Cux1P53564 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cux1P53564 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cux1P53564 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC20.64■□□□□ 0.9
Cux1P53564 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cux1P53564 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC20.64■□□□□ 0.9
Cux1P53564 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC20.64■□□□□ 0.9
Cux1P53564 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Cux1P53564 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cux1P53564 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC20.64■□□□□ 0.9
Cux1P53564 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Cux1P53564 Gm6458-201ENSMUST00000211573 635 ntBASIC20.64■□□□□ 0.9
Cux1P53564 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC20.64■□□□□ 0.89
Cux1P53564 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cux1P53564 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cux1P53564 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cux1P53564 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cux1P53564 Gm15897-201ENSMUST00000117770 1486 ntBASIC20.64■□□□□ 0.89
Cux1P53564 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cux1P53564 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cux1P53564 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cux1P53564 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Cux1P53564 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Cux1P53564 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cux1P53564 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cux1P53564 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
Cux1P53564 Gm24830-201ENSMUST00000102024 166 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC20.63■□□□□ 0.89
Cux1P53564 Gm25668-201ENSMUST00000157700 129 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Gm25890-201ENSMUST00000177643 165 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Rnu1b2-201ENSMUST00000178073 165 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Rnu1b1-201ENSMUST00000178250 165 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Gm22614-201ENSMUST00000178300 165 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC20.63■□□□□ 0.89
Cux1P53564 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC20.63■□□□□ 0.89
Cux1P53564 Gm22042-201ENSMUST00000082989 165 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Gm26232-201ENSMUST00000083360 166 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Gm24136-201ENSMUST00000083374 165 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Rnu1b6-201ENSMUST00000083839 166 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Gm26110-201ENSMUST00000083971 165 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Cux1P53564 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC20.63■□□□□ 0.89
Cux1P53564 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
Cux1P53564 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Cux1P53564 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC20.63■□□□□ 0.89
Cux1P53564 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Cux1P53564 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cux1P53564 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC20.63■□□□□ 0.89
Cux1P53564 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Cux1P53564 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Cux1P53564 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cux1P53564 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Cux1P53564 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cux1P53564 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cux1P53564 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cux1P53564 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
Cux1P53564 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Cux1P53564 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cux1P53564 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cux1P53564 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC20.62■□□□□ 0.89
Cux1P53564 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cux1P53564 Gm12715-201ENSMUST00000121430 1128 ntBASIC20.62■□□□□ 0.89
Cux1P53564 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 71 ms