Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col18a1P39061 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Col18a1P39061 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Col18a1P39061 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC17.67■□□□□ 0.42
Col18a1P39061 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Col18a1P39061 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
Col18a1P39061 CT025551.1-201ENSMUST00000223996 692 ntBASIC17.67■□□□□ 0.42
Col18a1P39061 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Col18a1P39061 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC17.67■□□□□ 0.42
Col18a1P39061 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.67■□□□□ 0.42
Col18a1P39061 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col18a1P39061 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Gm11941-201ENSMUST00000119904 610 ntBASIC17.66■□□□□ 0.42
Col18a1P39061 Gm12029-201ENSMUST00000120073 832 ntBASIC17.66■□□□□ 0.42
Col18a1P39061 Gm15432-201ENSMUST00000121106 195 ntBASIC17.66■□□□□ 0.42
Col18a1P39061 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC17.66■□□□□ 0.42
Col18a1P39061 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Col18a1P39061 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Col18a1P39061 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC17.66■□□□□ 0.42
Col18a1P39061 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC17.66■□□□□ 0.42
Col18a1P39061 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Col18a1P39061 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Col18a1P39061 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Col18a1P39061 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Col18a1P39061 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC17.66■□□□□ 0.42
Col18a1P39061 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Col18a1P39061 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Gm6039-201ENSMUST00000121667 1250 ntBASIC17.66■□□□□ 0.42
Col18a1P39061 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC17.66■□□□□ 0.42
Col18a1P39061 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC17.66■□□□□ 0.42
Col18a1P39061 Gm5616-201ENSMUST00000165252 384 ntBASIC17.66■□□□□ 0.42
Col18a1P39061 Gm8741-201ENSMUST00000174736 384 ntBASIC17.66■□□□□ 0.42
Col18a1P39061 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC17.66■□□□□ 0.42
Col18a1P39061 Gm45598-202ENSMUST00000210719 986 ntBASIC17.66■□□□□ 0.42
Col18a1P39061 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC17.66■□□□□ 0.42
Col18a1P39061 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col18a1P39061 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC17.65■□□□□ 0.42
Col18a1P39061 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC17.65■□□□□ 0.42
Col18a1P39061 Gm23949-201ENSMUST00000104027 127 ntBASIC17.65■□□□□ 0.42
Col18a1P39061 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Gm12165-201ENSMUST00000117047 342 ntBASIC17.65■□□□□ 0.42
Col18a1P39061 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC17.65■□□□□ 0.42
Col18a1P39061 AC107638.1-201ENSMUST00000213690 1061 ntBASIC17.65■□□□□ 0.42
Col18a1P39061 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC17.65■□□□□ 0.42
Col18a1P39061 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Col18a1P39061 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC17.65■□□□□ 0.42
Col18a1P39061 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
Col18a1P39061 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC17.65■□□□□ 0.42
Col18a1P39061 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col18a1P39061 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Col18a1P39061 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC17.64■□□□□ 0.42
Col18a1P39061 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
Col18a1P39061 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col18a1P39061 Gm6580-201ENSMUST00000117504 1357 ntBASIC17.64■□□□□ 0.42
Col18a1P39061 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms