Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC16.11■□□□□ 0.17
Col3a1P08121 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC16.11■□□□□ 0.17
Col3a1P08121 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Col3a1P08121 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Gm5639-201ENSMUST00000122305 2403 ntBASIC16.11■□□□□ 0.17
Col3a1P08121 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Gm14723-201ENSMUST00000118686 215 ntBASIC16.1■□□□□ 0.17
Col3a1P08121 Gm12329-201ENSMUST00000120829 1007 ntBASIC16.1■□□□□ 0.17
Col3a1P08121 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC16.1■□□□□ 0.17
Col3a1P08121 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC16.1■□□□□ 0.17
Col3a1P08121 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC16.1■□□□□ 0.17
Col3a1P08121 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Gm45880-201ENSMUST00000213041 853 ntBASIC16.1■□□□□ 0.17
Col3a1P08121 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Col3a1P08121 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 Gm11591-201ENSMUST00000120063 702 ntBASIC16.1■□□□□ 0.17
Col3a1P08121 Gm11658-201ENSMUST00000120913 1008 ntBASIC16.1■□□□□ 0.17
Col3a1P08121 Gm12363-201ENSMUST00000122250 668 ntBASIC16.1■□□□□ 0.17
Col3a1P08121 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC16.1■□□□□ 0.17
Col3a1P08121 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Gm2467-201ENSMUST00000182266 1010 ntBASIC16.1■□□□□ 0.17
Col3a1P08121 Gm6981-201ENSMUST00000182467 1008 ntBASIC16.1■□□□□ 0.17
Col3a1P08121 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC16.1■□□□□ 0.17
Col3a1P08121 AC154276.1-201ENSMUST00000228874 1299 ntBASIC16.1■□□□□ 0.17
Col3a1P08121 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col3a1P08121 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Col3a1P08121 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Col3a1P08121 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Col3a1P08121 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Gm43423-201ENSMUST00000198390 2094 ntBASIC16.09■□□□□ 0.17
Col3a1P08121 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Gm10729-202ENSMUST00000193403 1375 ntBASIC16.09■□□□□ 0.17
Col3a1P08121 AC101945.2-201ENSMUST00000227886 1377 ntBASIC16.09■□□□□ 0.17
Col3a1P08121 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC16.09■□□□□ 0.17
Col3a1P08121 Gm16379-201ENSMUST00000161469 348 ntBASIC16.09■□□□□ 0.17
Col3a1P08121 Gm27501-201ENSMUST00000183599 107 ntBASIC16.09■□□□□ 0.17
Col3a1P08121 Gm8762-201ENSMUST00000193486 339 ntBASIC16.09■□□□□ 0.17
Col3a1P08121 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC16.09■□□□□ 0.17
Col3a1P08121 AC022775.2-201ENSMUST00000227885 646 ntBASIC16.09■□□□□ 0.17
Col3a1P08121 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Col3a1P08121 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC16.09■□□□□ 0.17
Col3a1P08121 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Col3a1P08121 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col3a1P08121 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Col3a1P08121 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Col3a1P08121 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms