Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gm45398-201ENSMUST00000210561 165 ntBASIC18.17■□□□□ 0.5
Scn4aQ9ER60 CT009713.8-202ENSMUST00000224732 385 ntBASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gm13271-201ENSMUST00000094992 549 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gm12020-201ENSMUST00000119030 2042 ntBASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn4aQ9ER60 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Gm12501-201ENSMUST00000119163 529 ntBASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Mir6923-201ENSMUST00000184592 72 ntBASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Gm38355-201ENSMUST00000192514 1570 ntBASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Gm12015-201ENSMUST00000117065 843 ntBASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn4aQ9ER60 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Gm6722-201ENSMUST00000221586 390 ntBASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Scn4aQ9ER60 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Scn4aQ9ER60 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.14■□□□□ 0.5
Scn4aQ9ER60 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Scn4aQ9ER60 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Scn4aQ9ER60 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Scn4aQ9ER60 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Scn4aQ9ER60 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Scn4aQ9ER60 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC18.14■□□□□ 0.5
Scn4aQ9ER60 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC18.14■□□□□ 0.5
Scn4aQ9ER60 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
Scn4aQ9ER60 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Gm12948-201ENSMUST00000119406 682 ntBASIC18.14■□□□□ 0.49
Scn4aQ9ER60 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms