Protein–RNA interactions for Protein: Q99LF4

Rtcb, tRNA-splicing ligase RtcB homolog, mousemouse

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RtcbQ99LF4 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Gm9431-201ENSMUST00000119765 1051 ntBASIC16.81■□□□□ 0.28
RtcbQ99LF4 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC16.81■□□□□ 0.28
RtcbQ99LF4 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC16.81■□□□□ 0.28
RtcbQ99LF4 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC16.81■□□□□ 0.28
RtcbQ99LF4 AC155637.1-201ENSMUST00000218560 636 ntBASIC16.81■□□□□ 0.28
RtcbQ99LF4 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RtcbQ99LF4 Gm38102-201ENSMUST00000192791 1935 ntBASIC16.8■□□□□ 0.28
RtcbQ99LF4 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Gm8793-201ENSMUST00000183069 1303 ntBASIC16.8■□□□□ 0.28
RtcbQ99LF4 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RtcbQ99LF4 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RtcbQ99LF4 AC113441.2-201ENSMUST00000221538 1468 ntBASIC16.8■□□□□ 0.28
RtcbQ99LF4 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC16.79■□□□□ 0.28
RtcbQ99LF4 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Gm16202-201ENSMUST00000117532 544 ntBASIC16.79■□□□□ 0.28
RtcbQ99LF4 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC16.79■□□□□ 0.28
RtcbQ99LF4 AC022775.2-201ENSMUST00000227885 646 ntBASIC16.79■□□□□ 0.28
RtcbQ99LF4 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RtcbQ99LF4 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Gm38058-201ENSMUST00000194323 4368 ntBASIC16.78■□□□□ 0.28
RtcbQ99LF4 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.78■□□□□ 0.28
RtcbQ99LF4 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Gm3890-201ENSMUST00000182416 207 ntBASIC16.78■□□□□ 0.28
RtcbQ99LF4 Gm44487-201ENSMUST00000205145 325 ntBASIC16.78■□□□□ 0.28
RtcbQ99LF4 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RtcbQ99LF4 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
RtcbQ99LF4 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
RtcbQ99LF4 Gm14608-201ENSMUST00000120030 1553 ntBASIC16.77■□□□□ 0.28
RtcbQ99LF4 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RtcbQ99LF4 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RtcbQ99LF4 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RtcbQ99LF4 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
RtcbQ99LF4 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms