Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Usp11Q99K46 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Usp11Q99K46 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Usp11Q99K46 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Usp11Q99K46 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Usp11Q99K46 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Usp11Q99K46 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Usp11Q99K46 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
Usp11Q99K46 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Usp11Q99K46 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC14.46□□□□□ -0.1
Usp11Q99K46 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Usp11Q99K46 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Usp11Q99K46 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Usp11Q99K46 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Usp11Q99K46 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC14.45□□□□□ -0.1
Usp11Q99K46 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Usp11Q99K46 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Usp11Q99K46 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Usp11Q99K46 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Gm15653-201ENSMUST00000119247 907 ntBASIC14.45□□□□□ -0.1
Usp11Q99K46 Gm14767-201ENSMUST00000121559 586 ntBASIC14.45□□□□□ -0.1
Usp11Q99K46 Mir1897-201ENSMUST00000122581 272 ntBASIC14.45□□□□□ -0.1
Usp11Q99K46 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC14.45□□□□□ -0.1
Usp11Q99K46 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC14.45□□□□□ -0.1
Usp11Q99K46 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.45□□□□□ -0.1
Usp11Q99K46 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC14.45□□□□□ -0.1
Usp11Q99K46 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Gm38102-201ENSMUST00000192791 1935 ntBASIC14.45□□□□□ -0.1
Usp11Q99K46 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp11Q99K46 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Gm44065-201ENSMUST00000203184 3527 ntBASIC14.44□□□□□ -0.1
Usp11Q99K46 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC14.44□□□□□ -0.1
Usp11Q99K46 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Usp11Q99K46 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Usp11Q99K46 Auts2-212ENSMUST00000178555 309 ntBASIC14.44□□□□□ -0.1
Usp11Q99K46 Gm27306-201ENSMUST00000183970 107 ntBASIC14.44□□□□□ -0.1
Usp11Q99K46 Gm27680-201ENSMUST00000184192 160 ntBASIC14.44□□□□□ -0.1
Usp11Q99K46 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Usp11Q99K46 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
Usp11Q99K46 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Usp11Q99K46 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp11Q99K46 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC14.43□□□□□ -0.1
Usp11Q99K46 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Usp11Q99K46 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.43□□□□□ -0.1
Usp11Q99K46 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 Gm44344-201ENSMUST00000200287 129 ntBASIC14.43□□□□□ -0.1
Usp11Q99K46 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp11Q99K46 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms