Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
Trim27Q62158 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC16.8■□□□□ 0.28
Trim27Q62158 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Trim27Q62158 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
Trim27Q62158 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
Trim27Q62158 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Gm31326-201ENSMUST00000191856 1048 ntBASIC16.8■□□□□ 0.28
Trim27Q62158 Gm38197-201ENSMUST00000192320 2122 ntBASIC16.8■□□□□ 0.28
Trim27Q62158 Gm6218-201ENSMUST00000219812 628 ntBASIC16.8■□□□□ 0.28
Trim27Q62158 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC16.8■□□□□ 0.28
Trim27Q62158 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC16.8■□□□□ 0.28
Trim27Q62158 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim27Q62158 Tmed9-203ENSMUST00000224741 1450 ntBASIC16.8■□□□□ 0.28
Trim27Q62158 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Trim27Q62158 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
Trim27Q62158 Gm38346-201ENSMUST00000192379 2639 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim27Q62158 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Trim27Q62158 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Gm12537-201ENSMUST00000119266 1002 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Gm12070-201ENSMUST00000119551 1002 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Gm12671-201ENSMUST00000119978 1002 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Gm13292-201ENSMUST00000120014 1000 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Gm12403-201ENSMUST00000121384 959 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC16.79■□□□□ 0.28
Trim27Q62158 Gm10359-201ENSMUST00000180167 1002 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Gm12033-201ENSMUST00000180654 1002 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Gm5559-201ENSMUST00000180755 1002 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Gm4335-201ENSMUST00000182581 1004 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim27Q62158 Gm7730-201ENSMUST00000212486 454 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim27Q62158 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Gm7899-201ENSMUST00000192935 1897 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Gm10710-201ENSMUST00000047876 3971 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Trim27Q62158 Gm3365-201ENSMUST00000216296 1480 ntBASIC16.79■□□□□ 0.28
Trim27Q62158 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim27Q62158 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Trim27Q62158 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim27Q62158 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Gm14057-201ENSMUST00000120631 482 ntBASIC16.78■□□□□ 0.28
Trim27Q62158 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim27Q62158 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Gm26464-201ENSMUST00000157094 305 ntBASIC16.78■□□□□ 0.28
Trim27Q62158 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Trim27Q62158 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim27Q62158 Gm45242-201ENSMUST00000210666 2129 ntBASIC16.78■□□□□ 0.28
Trim27Q62158 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim27Q62158 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms