Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Best4-ps-201ENSMUST00000129783 1380 ntBASIC14.26□□□□□ -0.13
Rnf40Q3U319 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Gm42651-201ENSMUST00000199851 1339 ntBASIC14.26□□□□□ -0.13
Rnf40Q3U319 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Rbfox2-207ENSMUST00000227533 1041 ntBASIC14.26□□□□□ -0.13
Rnf40Q3U319 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Gm43677-201ENSMUST00000198098 2378 ntBASIC14.25□□□□□ -0.13
Rnf40Q3U319 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Gm15875-201ENSMUST00000152264 273 ntTSL 3 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Olfr202-202ENSMUST00000201687 1232 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Gm45071-201ENSMUST00000205353 571 ntBASIC14.25□□□□□ -0.13
Rnf40Q3U319 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 AC153889.1-201ENSMUST00000219257 330 ntBASIC14.25□□□□□ -0.13
Rnf40Q3U319 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Rnf212-201ENSMUST00000068946 288 ntTSL 5 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Paupar-201ENSMUST00000194826 3482 ntBASIC14.25□□□□□ -0.13
Rnf40Q3U319 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf40Q3U319 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC14.24□□□□□ -0.13
Rnf40Q3U319 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Gm37648-201ENSMUST00000192072 2563 ntBASIC14.24□□□□□ -0.13
Rnf40Q3U319 Gm25318-201ENSMUST00000122554 314 ntBASIC14.24□□□□□ -0.13
Rnf40Q3U319 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 76.2 ms