Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Cdh11P55288 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Cdh11P55288 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Cdh11P55288 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC12.51□□□□□ -0.41
Cdh11P55288 Gm13223-201ENSMUST00000118609 747 ntBASIC12.51□□□□□ -0.41
Cdh11P55288 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC12.51□□□□□ -0.41
Cdh11P55288 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Cdh11P55288 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC12.51□□□□□ -0.41
Cdh11P55288 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.51□□□□□ -0.41
Cdh11P55288 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Cdh11P55288 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC12.51□□□□□ -0.41
Cdh11P55288 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Cdh11P55288 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdh11P55288 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Cdh11P55288 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Gm14752-201ENSMUST00000120719 2075 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Cdh11P55288 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Cdh11P55288 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Gm13453-201ENSMUST00000118708 357 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Gm5479-201ENSMUST00000160578 435 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Gm25144-201ENSMUST00000179561 110 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 Gm25352-201ENSMUST00000179815 110 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Gm18766-201ENSMUST00000189811 808 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 Gm29541-201ENSMUST00000191351 678 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 Gm45098-201ENSMUST00000207179 657 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Gm6888-201ENSMUST00000221983 706 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 AC158529.1-201ENSMUST00000223618 239 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Cdh11P55288 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Gm12020-201ENSMUST00000119030 2042 ntBASIC12.5□□□□□ -0.41
Cdh11P55288 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC12.5□□□□□ -0.41
Cdh11P55288 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdh11P55288 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Cdh11P55288 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdh11P55288 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC12.49□□□□□ -0.41
Cdh11P55288 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdh11P55288 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdh11P55288 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdh11P55288 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdh11P55288 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdh11P55288 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdh11P55288 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdh11P55288 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdh11P55288 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cdh11P55288 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms