Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC20.7■□□□□ 0.9
Cux1P53564 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC20.69■□□□□ 0.9
Cux1P53564 Gm12539-201ENSMUST00000121549 1098 ntBASIC20.69■□□□□ 0.9
Cux1P53564 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Cux1P53564 Gm3786-201ENSMUST00000202659 378 ntBASIC20.69■□□□□ 0.9
Cux1P53564 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC20.69■□□□□ 0.9
Cux1P53564 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Cux1P53564 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cux1P53564 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC20.68■□□□□ 0.9
Cux1P53564 Gm11222-201ENSMUST00000119005 738 ntBASIC20.68■□□□□ 0.9
Cux1P53564 Gm6161-201ENSMUST00000121942 1102 ntBASIC20.68■□□□□ 0.9
Cux1P53564 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Cux1P53564 Gm6254-201ENSMUST00000168178 1072 ntBASIC20.68■□□□□ 0.9
Cux1P53564 Gm6153-201ENSMUST00000172004 1058 ntBASIC20.68■□□□□ 0.9
Cux1P53564 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Cux1P53564 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Cux1P53564 Gm5641-202ENSMUST00000198699 1080 ntBASIC20.68■□□□□ 0.9
Cux1P53564 Gm30285-201ENSMUST00000214614 422 ntBASIC20.68■□□□□ 0.9
Cux1P53564 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Cux1P53564 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC20.68■□□□□ 0.9
Cux1P53564 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC20.68■□□□□ 0.9
Cux1P53564 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Cux1P53564 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Cux1P53564 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Cux1P53564 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Cux1P53564 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Cux1P53564 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC20.68■□□□□ 0.9
Cux1P53564 Gm12012-201ENSMUST00000118857 1066 ntBASIC20.68■□□□□ 0.9
Cux1P53564 Gm8176-201ENSMUST00000191297 1099 ntBASIC20.68■□□□□ 0.9
Cux1P53564 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC20.68■□□□□ 0.9
Cux1P53564 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cux1P53564 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Cux1P53564 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC20.67■□□□□ 0.9
Cux1P53564 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Cux1P53564 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Cux1P53564 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC20.67■□□□□ 0.9
Cux1P53564 Gm16570-201ENSMUST00000161951 436 ntBASIC20.67■□□□□ 0.9
Cux1P53564 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Cux1P53564 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 n-R5s77-201ENSMUST00000083757 119 ntBASIC20.67■□□□□ 0.9
Cux1P53564 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cux1P53564 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cux1P53564 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cux1P53564 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cux1P53564 AC113441.2-201ENSMUST00000221538 1468 ntBASIC20.66■□□□□ 0.9
Cux1P53564 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Cux1P53564 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC20.66■□□□□ 0.9
Cux1P53564 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cux1P53564 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Cux1P53564 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cux1P53564 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC20.66■□□□□ 0.9
Cux1P53564 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
Cux1P53564 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Cux1P53564 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Cux1P53564 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cux1P53564 Gm9445-201ENSMUST00000207454 1285 ntBASIC20.66■□□□□ 0.9
Cux1P53564 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cux1P53564 Mir433-201ENSMUST00000093564 124 ntBASIC20.66■□□□□ 0.9
Cux1P53564 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cux1P53564 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms