Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm44891-201ENSMUST00000208817 2223 ntBASIC16.35■□□□□ 0.21
Rfx1P48377 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Gm45751-201ENSMUST00000210185 1573 ntBASIC16.35■□□□□ 0.21
Rfx1P48377 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC16.35■□□□□ 0.21
Rfx1P48377 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC16.35■□□□□ 0.21
Rfx1P48377 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC16.35■□□□□ 0.21
Rfx1P48377 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC16.35■□□□□ 0.21
Rfx1P48377 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC16.35■□□□□ 0.21
Rfx1P48377 AA543401-201ENSMUST00000164248 1269 ntBASIC16.35■□□□□ 0.21
Rfx1P48377 Mir3113-201ENSMUST00000175478 76 ntBASIC16.35■□□□□ 0.21
Rfx1P48377 Gm3809-201ENSMUST00000180973 1006 ntBASIC16.35■□□□□ 0.21
Rfx1P48377 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC16.35■□□□□ 0.21
Rfx1P48377 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC16.35■□□□□ 0.21
Rfx1P48377 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Gm20633-201ENSMUST00000176742 2831 ntBASIC16.35■□□□□ 0.21
Rfx1P48377 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC16.34■□□□□ 0.21
Rfx1P48377 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Rfx1P48377 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC16.34■□□□□ 0.21
Rfx1P48377 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC16.34■□□□□ 0.21
Rfx1P48377 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC16.34■□□□□ 0.21
Rfx1P48377 Gm6222-201ENSMUST00000120787 396 ntBASIC16.34■□□□□ 0.21
Rfx1P48377 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Gm17271-201ENSMUST00000165535 355 ntBASIC16.34■□□□□ 0.21
Rfx1P48377 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Rfx1P48377 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Rfx1P48377 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Rfx1P48377 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC16.34■□□□□ 0.21
Rfx1P48377 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Rfx1P48377 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Rfx1P48377 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Rfx1P48377 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Rfx1P48377 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Rfx1P48377 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Rfx1P48377 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Rfx1P48377 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Rfx1P48377 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC16.33■□□□□ 0.2
Rfx1P48377 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
Rfx1P48377 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC16.33■□□□□ 0.2
Rfx1P48377 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC16.33■□□□□ 0.2
Rfx1P48377 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Mir8117-201ENSMUST00000184773 107 ntBASIC16.33■□□□□ 0.2
Rfx1P48377 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC16.33■□□□□ 0.2
Rfx1P48377 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC16.33■□□□□ 0.2
Rfx1P48377 Gm18027-201ENSMUST00000218947 619 ntBASIC16.33■□□□□ 0.2
Rfx1P48377 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Rfx1P48377 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Rfx1P48377 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Gm6018-201ENSMUST00000216090 1306 ntBASIC16.33■□□□□ 0.2
Rfx1P48377 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Rfx1P48377 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Rfx1P48377 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC16.33■□□□□ 0.2
Rfx1P48377 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC16.33■□□□□ 0.2
Rfx1P48377 AC159196.2-201ENSMUST00000224082 1622 ntBASIC16.33■□□□□ 0.2
Rfx1P48377 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms