Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC11.19□□□□□ -0.62
Sdc1P18828 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC11.19□□□□□ -0.62
Sdc1P18828 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Sdc1P18828 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 AC137842.1-201ENSMUST00000227896 2064 ntBASIC11.19□□□□□ -0.62
Sdc1P18828 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Sdc1P18828 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Sdc1P18828 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Gm45643-201ENSMUST00000211364 1484 ntBASIC11.19□□□□□ -0.62
Sdc1P18828 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC11.19□□□□□ -0.62
Sdc1P18828 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sdc1P18828 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 AC119177.1-201ENSMUST00000227647 1332 ntBASIC11.18□□□□□ -0.62
Sdc1P18828 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Sdc1P18828 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Gm15372-201ENSMUST00000120729 834 ntBASIC11.18□□□□□ -0.62
Sdc1P18828 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Sdc1P18828 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC11.18□□□□□ -0.62
Sdc1P18828 Rbfox2-207ENSMUST00000227533 1041 ntBASIC11.18□□□□□ -0.62
Sdc1P18828 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC11.18□□□□□ -0.62
Sdc1P18828 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Sdc1P18828 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Sdc1P18828 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Sdc1P18828 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Sdc1P18828 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sdc1P18828 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC11.18□□□□□ -0.62
Sdc1P18828 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Sdc1P18828 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC11.17□□□□□ -0.62
Sdc1P18828 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC11.17□□□□□ -0.62
Sdc1P18828 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC11.17□□□□□ -0.62
Sdc1P18828 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Sdc1P18828 Gm22240-201ENSMUST00000175225 82 ntBASIC11.17□□□□□ -0.62
Sdc1P18828 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Gm27742-201ENSMUST00000184667 60 ntBASIC11.17□□□□□ -0.62
Sdc1P18828 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC11.17□□□□□ -0.62
Sdc1P18828 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC11.17□□□□□ -0.62
Sdc1P18828 Gm44719-201ENSMUST00000206404 149 ntBASIC11.17□□□□□ -0.62
Sdc1P18828 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Sdc1P18828 CT030704.2-201ENSMUST00000228887 494 ntBASIC11.17□□□□□ -0.62
Sdc1P18828 Spr-ps1-201ENSMUST00000089584 605 ntBASIC11.17□□□□□ -0.62
Sdc1P18828 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Sdc1P18828 Gm4782-201ENSMUST00000168705 2046 ntBASIC11.17□□□□□ -0.62
Sdc1P18828 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC11.17□□□□□ -0.62
Sdc1P18828 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms