Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Gm13385-201ENSMUST00000121089 220 ntBASIC10.73□□□□□ -0.69
Hoxd3P09027 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Gm3344-201ENSMUST00000169610 603 ntBASIC10.73□□□□□ -0.69
Hoxd3P09027 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Gm8679-201ENSMUST00000210651 1036 ntBASIC10.73□□□□□ -0.69
Hoxd3P09027 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Gm9115-201ENSMUST00000120192 1348 ntBASIC10.73□□□□□ -0.69
Hoxd3P09027 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm11557-201ENSMUST00000120200 1008 ntBASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm8584-201ENSMUST00000171982 758 ntBASIC10.72□□□□□ -0.69
Hoxd3P09027 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm16701-202ENSMUST00000180995 934 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm8927-201ENSMUST00000181978 981 ntBASIC10.72□□□□□ -0.69
Hoxd3P09027 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm44270-201ENSMUST00000203084 1234 ntBASIC10.72□□□□□ -0.69
Hoxd3P09027 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm9908-201ENSMUST00000211534 448 ntBASIC10.72□□□□□ -0.69
Hoxd3P09027 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Hoxd3P09027 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC10.72□□□□□ -0.69
Hoxd3P09027 CT030704.2-201ENSMUST00000228887 494 ntBASIC10.72□□□□□ -0.69
Hoxd3P09027 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm3222-201ENSMUST00000071282 990 ntBASIC10.72□□□□□ -0.69
Hoxd3P09027 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Hoxd3P09027 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC10.72□□□□□ -0.69
Hoxd3P09027 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hoxd3P09027 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hoxd3P09027 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hoxd3P09027 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC10.71□□□□□ -0.69
Hoxd3P09027 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hoxd3P09027 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hoxd3P09027 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms