Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC16.14■□□□□ 0.17
Col3a1P08121 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
Col3a1P08121 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 Gm2231-201ENSMUST00000125661 612 ntBASIC16.14■□□□□ 0.17
Col3a1P08121 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Col3a1P08121 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
Col3a1P08121 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 Gm25261-201ENSMUST00000157416 134 ntBASIC16.14■□□□□ 0.17
Col3a1P08121 Gm18827-201ENSMUST00000188341 790 ntBASIC16.14■□□□□ 0.17
Col3a1P08121 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 AC154462.2-201ENSMUST00000227519 370 ntBASIC16.14■□□□□ 0.17
Col3a1P08121 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC16.14■□□□□ 0.17
Col3a1P08121 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Col3a1P08121 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC16.14■□□□□ 0.17
Col3a1P08121 AC166491.1-201ENSMUST00000227053 2308 ntBASIC16.14■□□□□ 0.17
Col3a1P08121 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC16.13■□□□□ 0.17
Col3a1P08121 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.13■□□□□ 0.17
Col3a1P08121 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Col3a1P08121 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
Col3a1P08121 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC16.13■□□□□ 0.17
Col3a1P08121 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC16.13■□□□□ 0.17
Col3a1P08121 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC16.13■□□□□ 0.17
Col3a1P08121 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC16.13■□□□□ 0.17
Col3a1P08121 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Col3a1P08121 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC16.13■□□□□ 0.17
Col3a1P08121 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
Col3a1P08121 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Col3a1P08121 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col3a1P08121 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Col3a1P08121 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Col3a1P08121 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Gm18244-201ENSMUST00000219747 1566 ntBASIC16.12■□□□□ 0.17
Col3a1P08121 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC16.12■□□□□ 0.17
Col3a1P08121 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Col3a1P08121 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC16.12■□□□□ 0.17
Col3a1P08121 Gm5850-201ENSMUST00000192923 1206 ntBASIC16.12■□□□□ 0.17
Col3a1P08121 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC16.12■□□□□ 0.17
Col3a1P08121 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC16.12■□□□□ 0.17
Col3a1P08121 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Gm38049-201ENSMUST00000195698 1372 ntBASIC16.12■□□□□ 0.17
Col3a1P08121 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
Col3a1P08121 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.12■□□□□ 0.17
Col3a1P08121 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC16.12■□□□□ 0.17
Col3a1P08121 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Col3a1P08121 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col3a1P08121 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
Col3a1P08121 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC16.11■□□□□ 0.17
Col3a1P08121 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Gm6222-202ENSMUST00000182143 629 ntBASIC16.11■□□□□ 0.17
Col3a1P08121 Gm37008-201ENSMUST00000195712 319 ntBASIC16.11■□□□□ 0.17
Col3a1P08121 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col3a1P08121 Gm45930-201ENSMUST00000221330 292 ntBASIC16.11■□□□□ 0.17
Col3a1P08121 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms