Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Scn11aQ9R053 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Scn11aQ9R053 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC26.28■■□□□ 1.8
Scn11aQ9R053 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Scn11aQ9R053 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Scn11aQ9R053 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Scn11aQ9R053 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC26.27■■□□□ 1.8
Scn11aQ9R053 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Scn11aQ9R053 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC26.27■■□□□ 1.8
Scn11aQ9R053 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Scn11aQ9R053 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Scn11aQ9R053 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Scn11aQ9R053 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Scn11aQ9R053 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC26.25■■□□□ 1.79
Scn11aQ9R053 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Scn11aQ9R053 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Scn11aQ9R053 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Scn11aQ9R053 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Scn11aQ9R053 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Scn11aQ9R053 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Scn11aQ9R053 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC26.24■■□□□ 1.79
Scn11aQ9R053 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Scn11aQ9R053 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Scn11aQ9R053 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Scn11aQ9R053 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Scn11aQ9R053 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC26.23■■□□□ 1.79
Scn11aQ9R053 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC26.23■■□□□ 1.79
Scn11aQ9R053 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Scn11aQ9R053 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Scn11aQ9R053 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Scn11aQ9R053 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Scn11aQ9R053 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC26.22■■□□□ 1.79
Scn11aQ9R053 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Scn11aQ9R053 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Scn11aQ9R053 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Scn11aQ9R053 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
Scn11aQ9R053 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC26.2■■□□□ 1.79
Scn11aQ9R053 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC26.2■■□□□ 1.79
Scn11aQ9R053 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC26.2■■□□□ 1.79
Scn11aQ9R053 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC26.2■■□□□ 1.79
Scn11aQ9R053 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC26.2■■□□□ 1.79
Scn11aQ9R053 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Scn11aQ9R053 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Scn11aQ9R053 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Scn11aQ9R053 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Scn11aQ9R053 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC26.19■■□□□ 1.78
Scn11aQ9R053 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Scn11aQ9R053 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Scn11aQ9R053 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Scn11aQ9R053 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC26.19■■□□□ 1.78
Scn11aQ9R053 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Scn11aQ9R053 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Scn11aQ9R053 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Scn11aQ9R053 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
Scn11aQ9R053 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Scn11aQ9R053 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Scn11aQ9R053 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC26.18■■□□□ 1.78
Scn11aQ9R053 Gm11847-201ENSMUST00000125165 1119 ntBASIC26.18■■□□□ 1.78
Scn11aQ9R053 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC26.18■■□□□ 1.78
Scn11aQ9R053 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC26.18■■□□□ 1.78
Scn11aQ9R053 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Scn11aQ9R053 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Scn11aQ9R053 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Scn11aQ9R053 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Scn11aQ9R053 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Scn11aQ9R053 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
Scn11aQ9R053 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Scn11aQ9R053 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC26.15■■□□□ 1.78
Scn11aQ9R053 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Scn11aQ9R053 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Scn11aQ9R053 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Scn11aQ9R053 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC26.15■■□□□ 1.78
Scn11aQ9R053 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC26.15■■□□□ 1.78
Scn11aQ9R053 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC26.15■■□□□ 1.78
Scn11aQ9R053 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC26.15■■□□□ 1.78
Scn11aQ9R053 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
Scn11aQ9R053 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
Scn11aQ9R053 Gm8093-201ENSMUST00000128935 1892 ntBASIC26.14■■□□□ 1.77
Scn11aQ9R053 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
Scn11aQ9R053 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Scn11aQ9R053 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC26.13■■□□□ 1.77
Scn11aQ9R053 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
Scn11aQ9R053 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Scn11aQ9R053 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Scn11aQ9R053 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Scn11aQ9R053 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Scn11aQ9R053 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Scn11aQ9R053 Gm21956-201ENSMUST00000179946 522 ntBASIC26.12■■□□□ 1.77
Scn11aQ9R053 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
Scn11aQ9R053 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Scn11aQ9R053 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC26.11■■□□□ 1.77
Scn11aQ9R053 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Scn11aQ9R053 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC26.11■■□□□ 1.77
Scn11aQ9R053 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Scn11aQ9R053 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC26.1■■□□□ 1.77
Scn11aQ9R053 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Scn11aQ9R053 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
Scn11aQ9R053 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Scn11aQ9R053 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Scn11aQ9R053 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC26.09■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms