Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Smarca1Q6PGB8 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Smarca1Q6PGB8 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Smarca1Q6PGB8 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Smarca1Q6PGB8 Dmtn-209ENSMUST00000228295 2572 ntBASIC24.12■■□□□ 1.45
Smarca1Q6PGB8 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Smarca1Q6PGB8 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Smarca1Q6PGB8 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
Smarca1Q6PGB8 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Smarca1Q6PGB8 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Smarca1Q6PGB8 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Smarca1Q6PGB8 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Smarca1Q6PGB8 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
Smarca1Q6PGB8 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Smarca1Q6PGB8 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Smarca1Q6PGB8 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Smarca1Q6PGB8 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Smarca1Q6PGB8 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
Smarca1Q6PGB8 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Smarca1Q6PGB8 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
Smarca1Q6PGB8 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC24.08■■□□□ 1.44
Smarca1Q6PGB8 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
Smarca1Q6PGB8 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
Smarca1Q6PGB8 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Smarca1Q6PGB8 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC24.06■■□□□ 1.44
Smarca1Q6PGB8 AC153524.1-201ENSMUST00000220436 1935 ntBASIC24.06■■□□□ 1.44
Smarca1Q6PGB8 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
Smarca1Q6PGB8 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
Smarca1Q6PGB8 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Smarca1Q6PGB8 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Smarca1Q6PGB8 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC24.06■■□□□ 1.44
Smarca1Q6PGB8 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Smarca1Q6PGB8 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
Smarca1Q6PGB8 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Smarca1Q6PGB8 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Smarca1Q6PGB8 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC24.05■■□□□ 1.44
Smarca1Q6PGB8 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Smarca1Q6PGB8 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Smarca1Q6PGB8 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Smarca1Q6PGB8 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Smarca1Q6PGB8 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Smarca1Q6PGB8 Gm22567-201ENSMUST00000175542 342 ntBASIC24.03■■□□□ 1.44
Smarca1Q6PGB8 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC24.03■■□□□ 1.44
Smarca1Q6PGB8 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Smarca1Q6PGB8 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Smarca1Q6PGB8 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Smarca1Q6PGB8 AC153962.1-201ENSMUST00000218530 1948 ntBASIC24.02■■□□□ 1.44
Smarca1Q6PGB8 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Smarca1Q6PGB8 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Smarca1Q6PGB8 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Smarca1Q6PGB8 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Smarca1Q6PGB8 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Smarca1Q6PGB8 AC115037.1-201ENSMUST00000223391 2173 ntBASIC24.02■■□□□ 1.44
Smarca1Q6PGB8 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Smarca1Q6PGB8 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Smarca1Q6PGB8 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Smarca1Q6PGB8 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Smarca1Q6PGB8 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Smarca1Q6PGB8 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Smarca1Q6PGB8 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Smarca1Q6PGB8 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC24■■□□□ 1.43
Smarca1Q6PGB8 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC24■■□□□ 1.43
Smarca1Q6PGB8 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC24■■□□□ 1.43
Smarca1Q6PGB8 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
Smarca1Q6PGB8 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Smarca1Q6PGB8 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC23.99■■□□□ 1.43
Smarca1Q6PGB8 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC23.99■■□□□ 1.43
Smarca1Q6PGB8 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Smarca1Q6PGB8 Gm5812-201ENSMUST00000061073 957 ntBASIC23.99■■□□□ 1.43
Smarca1Q6PGB8 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
Smarca1Q6PGB8 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
Smarca1Q6PGB8 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Smarca1Q6PGB8 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC23.98■■□□□ 1.43
Smarca1Q6PGB8 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Smarca1Q6PGB8 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Smarca1Q6PGB8 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Smarca1Q6PGB8 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
Smarca1Q6PGB8 Nsd1-203ENSMUST00000224156 1149 ntBASIC23.97■■□□□ 1.43
Smarca1Q6PGB8 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Smarca1Q6PGB8 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Smarca1Q6PGB8 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC23.96■■□□□ 1.43
Smarca1Q6PGB8 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
Smarca1Q6PGB8 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Smarca1Q6PGB8 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Smarca1Q6PGB8 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC23.96■■□□□ 1.43
Smarca1Q6PGB8 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
Smarca1Q6PGB8 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
Smarca1Q6PGB8 Gm13042-201ENSMUST00000119244 1955 ntBASIC23.95■■□□□ 1.42
Smarca1Q6PGB8 Gm45444-201ENSMUST00000211394 898 ntBASIC23.95■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms