Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Snrnp40Q6PE01 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Snrnp40Q6PE01 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Snrnp40Q6PE01 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Snrnp40Q6PE01 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Snrnp40Q6PE01 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Snrnp40Q6PE01 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Snrnp40Q6PE01 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Snrnp40Q6PE01 Gm12821-201ENSMUST00000120022 600 ntBASIC19.26■□□□□ 0.67
Snrnp40Q6PE01 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.26■□□□□ 0.67
Snrnp40Q6PE01 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.26■□□□□ 0.67
Snrnp40Q6PE01 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Snrnp40Q6PE01 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Snrnp40Q6PE01 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Snrnp40Q6PE01 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Snrnp40Q6PE01 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC19.25■□□□□ 0.67
Snrnp40Q6PE01 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Snrnp40Q6PE01 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Snrnp40Q6PE01 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Snrnp40Q6PE01 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.24■□□□□ 0.67
Snrnp40Q6PE01 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Snrnp40Q6PE01 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.24■□□□□ 0.67
Snrnp40Q6PE01 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Snrnp40Q6PE01 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Snrnp40Q6PE01 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Snrnp40Q6PE01 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Snrnp40Q6PE01 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Snrnp40Q6PE01 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Snrnp40Q6PE01 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Snrnp40Q6PE01 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Snrnp40Q6PE01 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Snrnp40Q6PE01 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Snrnp40Q6PE01 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Snrnp40Q6PE01 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Snrnp40Q6PE01 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Snrnp40Q6PE01 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Snrnp40Q6PE01 AC117245.4-201ENSMUST00000217388 1646 ntBASIC19.22■□□□□ 0.67
Snrnp40Q6PE01 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Snrnp40Q6PE01 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Snrnp40Q6PE01 Gm27454-201ENSMUST00000185090 204 ntBASIC19.21■□□□□ 0.67
Snrnp40Q6PE01 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Snrnp40Q6PE01 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Snrnp40Q6PE01 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Snrnp40Q6PE01 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.2■□□□□ 0.66
Snrnp40Q6PE01 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Snrnp40Q6PE01 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Snrnp40Q6PE01 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Snrnp40Q6PE01 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Snrnp40Q6PE01 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC19.18■□□□□ 0.66
Snrnp40Q6PE01 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC19.18■□□□□ 0.66
Snrnp40Q6PE01 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.18■□□□□ 0.66
Snrnp40Q6PE01 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Snrnp40Q6PE01 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
Snrnp40Q6PE01 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC19.18■□□□□ 0.66
Snrnp40Q6PE01 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Snrnp40Q6PE01 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Snrnp40Q6PE01 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC19.17■□□□□ 0.66
Snrnp40Q6PE01 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Snrnp40Q6PE01 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.17■□□□□ 0.66
Snrnp40Q6PE01 Gm45417-201ENSMUST00000209533 758 ntBASIC19.17■□□□□ 0.66
Snrnp40Q6PE01 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Snrnp40Q6PE01 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Snrnp40Q6PE01 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Snrnp40Q6PE01 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Snrnp40Q6PE01 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.16■□□□□ 0.66
Snrnp40Q6PE01 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC19.16■□□□□ 0.66
Snrnp40Q6PE01 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Snrnp40Q6PE01 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Snrnp40Q6PE01 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Snrnp40Q6PE01 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Snrnp40Q6PE01 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
Snrnp40Q6PE01 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.15■□□□□ 0.66
Snrnp40Q6PE01 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Snrnp40Q6PE01 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Snrnp40Q6PE01 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Snrnp40Q6PE01 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Snrnp40Q6PE01 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Snrnp40Q6PE01 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Snrnp40Q6PE01 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Snrnp40Q6PE01 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.14■□□□□ 0.65
Snrnp40Q6PE01 Golgb1-201ENSMUST00000023534 498 ntBASIC19.14■□□□□ 0.65
Snrnp40Q6PE01 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Snrnp40Q6PE01 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
Snrnp40Q6PE01 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Snrnp40Q6PE01 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Snrnp40Q6PE01 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.13■□□□□ 0.65
Snrnp40Q6PE01 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Snrnp40Q6PE01 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Snrnp40Q6PE01 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Snrnp40Q6PE01 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Snrnp40Q6PE01 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Snrnp40Q6PE01 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Snrnp40Q6PE01 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Snrnp40Q6PE01 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Snrnp40Q6PE01 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Snrnp40Q6PE01 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Snrnp40Q6PE01 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Snrnp40Q6PE01 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC19.11■□□□□ 0.65
Snrnp40Q6PE01 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC19.11■□□□□ 0.65
Snrnp40Q6PE01 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms