Protein–RNA interactions for Protein: P09022

Hoxa1, Homeobox protein Hox-A1, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa1P09022 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Hoxa1P09022 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Hoxa1P09022 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Hoxa1P09022 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Hoxa1P09022 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Hoxa1P09022 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Hoxa1P09022 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Hoxa1P09022 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Hoxa1P09022 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Hoxa1P09022 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.51■□□□□ 0.39
Hoxa1P09022 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Hoxa1P09022 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Hoxa1P09022 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hoxa1P09022 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hoxa1P09022 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hoxa1P09022 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC17.5■□□□□ 0.39
Hoxa1P09022 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Hoxa1P09022 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC17.5■□□□□ 0.39
Hoxa1P09022 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC17.5■□□□□ 0.39
Hoxa1P09022 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hoxa1P09022 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hoxa1P09022 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Hoxa1P09022 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC17.5■□□□□ 0.39
Hoxa1P09022 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC17.5■□□□□ 0.39
Hoxa1P09022 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
Hoxa1P09022 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Hoxa1P09022 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
Hoxa1P09022 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hoxa1P09022 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hoxa1P09022 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hoxa1P09022 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hoxa1P09022 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.49■□□□□ 0.39
Hoxa1P09022 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hoxa1P09022 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hoxa1P09022 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hoxa1P09022 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Hoxa1P09022 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC17.48■□□□□ 0.39
Hoxa1P09022 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hoxa1P09022 Gm44428-201ENSMUST00000204474 874 ntBASIC17.48■□□□□ 0.39
Hoxa1P09022 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hoxa1P09022 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Hoxa1P09022 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hoxa1P09022 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hoxa1P09022 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Hoxa1P09022 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hoxa1P09022 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hoxa1P09022 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.47■□□□□ 0.39
Hoxa1P09022 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC17.47■□□□□ 0.39
Hoxa1P09022 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Hoxa1P09022 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC17.47■□□□□ 0.39
Hoxa1P09022 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Hoxa1P09022 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Hoxa1P09022 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Hoxa1P09022 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Hoxa1P09022 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Hoxa1P09022 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC17.45■□□□□ 0.38
Hoxa1P09022 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Hoxa1P09022 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC17.45■□□□□ 0.38
Hoxa1P09022 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hoxa1P09022 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC17.45■□□□□ 0.38
Hoxa1P09022 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Hoxa1P09022 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Hoxa1P09022 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Hoxa1P09022 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Hoxa1P09022 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hoxa1P09022 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC17.44■□□□□ 0.38
Hoxa1P09022 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hoxa1P09022 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Hoxa1P09022 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hoxa1P09022 Scarna2-201ENSMUST00000157560 414 ntBASIC17.43■□□□□ 0.38
Hoxa1P09022 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hoxa1P09022 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hoxa1P09022 Gm9806-201ENSMUST00000051080 552 ntBASIC17.43■□□□□ 0.38
Hoxa1P09022 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Hoxa1P09022 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hoxa1P09022 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Hoxa1P09022 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hoxa1P09022 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hoxa1P09022 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hoxa1P09022 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hoxa1P09022 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Hoxa1P09022 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hoxa1P09022 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hoxa1P09022 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hoxa1P09022 Gm6277-202ENSMUST00000224036 2779 ntBASIC17.41■□□□□ 0.38
Hoxa1P09022 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hoxa1P09022 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hoxa1P09022 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC17.41■□□□□ 0.38
Hoxa1P09022 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hoxa1P09022 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Hoxa1P09022 AC117245.4-201ENSMUST00000217388 1646 ntBASIC17.4■□□□□ 0.38
Hoxa1P09022 Gm26766-202ENSMUST00000227544 2347 ntBASIC17.4■□□□□ 0.38
Hoxa1P09022 Gm16437-201ENSMUST00000025669 507 ntBASIC17.4■□□□□ 0.38
Hoxa1P09022 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC17.4■□□□□ 0.38
Hoxa1P09022 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hoxa1P09022 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hoxa1P09022 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Hoxa1P09022 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Hoxa1P09022 AC117769.4-201ENSMUST00000225679 685 ntBASIC17.39■□□□□ 0.37
Hoxa1P09022 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms