Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Gm46209-201ENSMUST00000217912 553 ntBASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Gm18041-201ENSMUST00000218210 618 ntBASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim3Q9R1R2 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Wdyhv1-203ENSMUST00000226889 394 ntBASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Gm5639-201ENSMUST00000122305 2403 ntBASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
Trim3Q9R1R2 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 AC156016.3-201ENSMUST00000228623 344 ntBASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms