Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Auts2-212ENSMUST00000178555 309 ntBASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 AC114543.1-201ENSMUST00000226451 1558 ntBASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Gm20614-201ENSMUST00000177106 632 ntBASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Gm6283-201ENSMUST00000182369 1000 ntBASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 AC238811.1-201ENSMUST00000225302 441 ntBASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 AC149294.4-201ENSMUST00000227870 882 ntBASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 CT025610.1-201ENSMUST00000224552 1786 ntBASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 4930433J02Rik-201ENSMUST00000194719 1386 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Prpf40aQ9R1C7 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Gm4875-201ENSMUST00000118257 786 ntBASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Gm38197-201ENSMUST00000192320 2122 ntBASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Prpf40aQ9R1C7 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Prpf40aQ9R1C7 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
Prpf40aQ9R1C7 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Prpf40aQ9R1C7 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
Prpf40aQ9R1C7 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
Prpf40aQ9R1C7 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Prpf40aQ9R1C7 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Prpf40aQ9R1C7 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Prpf40aQ9R1C7 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Prpf40aQ9R1C7 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms