Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trem1Q9JKE2 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trem1Q9JKE2 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trem1Q9JKE2 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trem1Q9JKE2 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trem1Q9JKE2 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Trem1Q9JKE2 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trem1Q9JKE2 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Trem1Q9JKE2 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trem1Q9JKE2 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trem1Q9JKE2 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 AC131586.1-201ENSMUST00000228844 2964 ntBASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trem1Q9JKE2 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Gm37600-201ENSMUST00000193764 3292 ntBASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Gm10176-201ENSMUST00000159707 2264 ntBASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Gm37411-201ENSMUST00000194180 2282 ntBASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 AC121577.1-201ENSMUST00000227302 707 ntBASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Gm38102-201ENSMUST00000192791 1935 ntBASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Gm15889-202ENSMUST00000212669 2443 ntBASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trem1Q9JKE2 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trem1Q9JKE2 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC12.25□□□□□ -0.45
Trem1Q9JKE2 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trem1Q9JKE2 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trem1Q9JKE2 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 95.9 ms