Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Gm12151-201ENSMUST00000121374 290 ntBASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Mir7684-201ENSMUST00000183858 60 ntBASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Mir8102-201ENSMUST00000184148 139 ntBASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Gm14452-201ENSMUST00000118680 1632 ntBASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Gm14752-201ENSMUST00000120719 2075 ntBASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Ddx56Q9D0R4 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Gm13859-201ENSMUST00000119936 1423 ntBASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Gm18905-201ENSMUST00000205454 928 ntBASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 AC159114.1-201ENSMUST00000220349 266 ntBASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx56Q9D0R4 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Gm15487-201ENSMUST00000122373 465 ntBASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Gm9522-201ENSMUST00000182394 926 ntBASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Mir7023-201ENSMUST00000185093 64 ntBASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms