Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Gm14452-201ENSMUST00000118680 1632 ntBASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Mir6956-201ENSMUST00000183598 62 ntBASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Gm18905-201ENSMUST00000205454 928 ntBASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 AC238811.1-201ENSMUST00000225302 441 ntBASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim58Q5NCC9 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Gm8775-201ENSMUST00000170943 1327 ntBASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
Trim58Q5NCC9 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim58Q5NCC9 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim58Q5NCC9 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms