Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC16.16■□□□□ 0.18
Limch1Q3UH68 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Gm9522-201ENSMUST00000182394 926 ntBASIC16.16■□□□□ 0.18
Limch1Q3UH68 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Gm33320-201ENSMUST00000192232 530 ntBASIC16.16■□□□□ 0.18
Limch1Q3UH68 Gm43433-201ENSMUST00000196573 481 ntBASIC16.16■□□□□ 0.18
Limch1Q3UH68 Gm9229-201ENSMUST00000222777 126 ntBASIC16.16■□□□□ 0.18
Limch1Q3UH68 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Limch1Q3UH68 Acot6-202ENSMUST00000222921 3622 ntBASIC16.15■□□□□ 0.18
Limch1Q3UH68 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Zkscan14-203ENSMUST00000198959 2243 ntBASIC16.15■□□□□ 0.18
Limch1Q3UH68 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Limch1Q3UH68 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC16.15■□□□□ 0.18
Limch1Q3UH68 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Gm18018-201ENSMUST00000198273 408 ntBASIC16.15■□□□□ 0.18
Limch1Q3UH68 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Limch1Q3UH68 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.18
Limch1Q3UH68 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Limch1Q3UH68 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Gm7390-201ENSMUST00000212452 1216 ntBASIC16.14■□□□□ 0.17
Limch1Q3UH68 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 CT030684.3-201ENSMUST00000227308 2445 ntBASIC16.14■□□□□ 0.17
Limch1Q3UH68 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Limch1Q3UH68 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Gm6912-201ENSMUST00000117218 544 ntBASIC16.13■□□□□ 0.17
Limch1Q3UH68 Gm15460-201ENSMUST00000118147 391 ntBASIC16.13■□□□□ 0.17
Limch1Q3UH68 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Mir497b-201ENSMUST00000093601 125 ntBASIC16.13■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 68.8 ms