Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 AC162938.1-201ENSMUST00000213140 2323 ntBASIC11.83□□□□□ -0.51
Nkx3-1P97436 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Nkx3-1P97436 AC168058.1-201ENSMUST00000219521 2282 ntBASIC11.83□□□□□ -0.52
Nkx3-1P97436 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Nkx3-1P97436 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Gm42693-201ENSMUST00000196779 631 ntBASIC11.82□□□□□ -0.52
Nkx3-1P97436 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Gm45331-201ENSMUST00000209868 554 ntBASIC11.82□□□□□ -0.52
Nkx3-1P97436 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Gm5161-201ENSMUST00000075243 853 ntBASIC11.82□□□□□ -0.52
Nkx3-1P97436 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Gm37411-201ENSMUST00000194180 2282 ntBASIC11.82□□□□□ -0.52
Nkx3-1P97436 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Gm13050-201ENSMUST00000122149 1345 ntBASIC11.82□□□□□ -0.52
Nkx3-1P97436 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Ankra2-208ENSMUST00000226100 1476 ntBASIC11.82□□□□□ -0.52
Nkx3-1P97436 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Nkx3-1P97436 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm21451-201ENSMUST00000111062 2775 ntBASIC11.81□□□□□ -0.52
Nkx3-1P97436 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm10605-202ENSMUST00000183019 3198 ntBASIC11.81□□□□□ -0.52
Nkx3-1P97436 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm24644-201ENSMUST00000157114 139 ntBASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm24196-201ENSMUST00000179161 110 ntBASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm9124-201ENSMUST00000191789 1092 ntBASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm9113-201ENSMUST00000192510 1018 ntBASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms