Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC16.3■□□□□ 0.2
Ercc3P49135 AC149294.4-201ENSMUST00000227870 882 ntBASIC16.3■□□□□ 0.2
Ercc3P49135 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ercc3P49135 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ercc3P49135 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ercc3P49135 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ercc3P49135 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Ercc3P49135 Gm19863-201ENSMUST00000192480 2218 ntBASIC16.3■□□□□ 0.2
Ercc3P49135 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ercc3P49135 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ercc3P49135 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ercc3P49135 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ercc3P49135 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ercc3P49135 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ercc3P49135 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC16.29■□□□□ 0.2
Ercc3P49135 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ercc3P49135 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Ercc3P49135 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ercc3P49135 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Ercc3P49135 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 H2-Pa-201ENSMUST00000182803 626 ntBASIC16.29■□□□□ 0.2
Ercc3P49135 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC16.29■□□□□ 0.2
Ercc3P49135 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC16.29■□□□□ 0.2
Ercc3P49135 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ercc3P49135 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ercc3P49135 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Ercc3P49135 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ercc3P49135 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC16.28■□□□□ 0.2
Ercc3P49135 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC16.28■□□□□ 0.2
Ercc3P49135 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Gm2445-201ENSMUST00000182798 989 ntBASIC16.28■□□□□ 0.2
Ercc3P49135 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC16.28■□□□□ 0.2
Ercc3P49135 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Ercc3P49135 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Ercc3P49135 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ercc3P49135 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ercc3P49135 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC16.27■□□□□ 0.2
Ercc3P49135 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ercc3P49135 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Ercc3P49135 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Ercc3P49135 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ercc3P49135 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ercc3P49135 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Ercc3P49135 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ercc3P49135 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ercc3P49135 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Ercc3P49135 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Ercc3P49135 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC16.27■□□□□ 0.2
Ercc3P49135 Gm14928-201ENSMUST00000120198 477 ntBASIC16.27■□□□□ 0.2
Ercc3P49135 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC16.27■□□□□ 0.2
Ercc3P49135 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC16.27■□□□□ 0.2
Ercc3P49135 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ercc3P49135 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC16.27■□□□□ 0.2
Ercc3P49135 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Ercc3P49135 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
Ercc3P49135 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Ercc3P49135 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ercc3P49135 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ercc3P49135 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Ercc3P49135 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC16.27■□□□□ 0.19
Ercc3P49135 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ercc3P49135 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC16.27■□□□□ 0.19
Ercc3P49135 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms