Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
P20040 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
P20040 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC12.22□□□□□ -0.45
P20040 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
P20040 Kcnk16-202ENSMUST00000225596 2127 ntBASIC12.22□□□□□ -0.45
P20040 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
P20040 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
P20040 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
P20040 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC12.22□□□□□ -0.45
P20040 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
P20040 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
P20040 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
P20040 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Gm9719-201ENSMUST00000162765 543 ntBASIC12.21□□□□□ -0.45
P20040 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
P20040 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
P20040 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
P20040 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.46
P20040 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC12.21□□□□□ -0.46
P20040 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
P20040 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
P20040 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
P20040 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
P20040 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC12.21□□□□□ -0.46
P20040 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
P20040 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
P20040 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
P20040 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
P20040 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
P20040 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
P20040 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
P20040 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
P20040 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
P20040 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC12.21□□□□□ -0.46
P20040 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC12.21□□□□□ -0.46
P20040 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
P20040 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
P20040 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC12.2□□□□□ -0.46
P20040 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Gm6222-201ENSMUST00000120787 396 ntBASIC12.2□□□□□ -0.46
P20040 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC12.2□□□□□ -0.46
P20040 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
P20040 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
P20040 Gm27618-201ENSMUST00000183671 60 ntBASIC12.2□□□□□ -0.46
P20040 Gm27622-201ENSMUST00000183779 60 ntBASIC12.2□□□□□ -0.46
P20040 Gm29310-201ENSMUST00000185468 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21825-201ENSMUST00000185728 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm29109-201ENSMUST00000185895 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21896-201ENSMUST00000186520 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21873-201ENSMUST00000186728 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21794-201ENSMUST00000187056 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21880-201ENSMUST00000187275 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21826-201ENSMUST00000187451 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm28630-201ENSMUST00000187806 498 ntBASIC12.2□□□□□ -0.46
P20040 Gm21198-201ENSMUST00000188393 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21749-201ENSMUST00000189343 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21901-201ENSMUST00000189568 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm29424-201ENSMUST00000189716 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm28599-201ENSMUST00000189838 694 ntBASIC12.2□□□□□ -0.46
P20040 Gm21867-201ENSMUST00000189917 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm29269-201ENSMUST00000190087 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21722-201ENSMUST00000190153 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm28423-201ENSMUST00000190701 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21899-201ENSMUST00000190745 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21910-201ENSMUST00000191163 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm21849-201ENSMUST00000191571 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm28678-201ENSMUST00000191593 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm20910-201ENSMUST00000193268 696 ntBASIC12.2□□□□□ -0.46
P20040 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Gm21871-201ENSMUST00000194621 696 ntBASIC12.2□□□□□ -0.46
P20040 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
P20040 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
P20040 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms