Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Hoxd3P09027 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC10.75□□□□□ -0.69
Hoxd3P09027 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 AC121801.1-201ENSMUST00000225363 1899 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Hoxd3P09027 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Gm6912-201ENSMUST00000117218 544 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 Gm12490-201ENSMUST00000120255 560 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC10.75□□□□□ -0.69
Hoxd3P09027 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Gm5354-201ENSMUST00000182417 973 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 Gm8502-201ENSMUST00000185708 901 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 Gm8510-201ENSMUST00000189202 895 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 Gm2316-201ENSMUST00000190613 921 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 Gm18905-201ENSMUST00000205454 928 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 Pafah1b1-ps2-201ENSMUST00000207209 1223 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 AC155286.1-201ENSMUST00000218632 448 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC10.75□□□□□ -0.69
Hoxd3P09027 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Gm6180-201ENSMUST00000065243 498 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC10.75□□□□□ -0.69
Hoxd3P09027 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC10.75□□□□□ -0.69
Hoxd3P09027 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC10.75□□□□□ -0.69
Hoxd3P09027 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hoxd3P09027 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Gm38391-201ENSMUST00000191720 4069 ntBASIC10.74□□□□□ -0.69
Hoxd3P09027 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 AC167013.2-201ENSMUST00000228520 2684 ntBASIC10.74□□□□□ -0.69
Hoxd3P09027 AC115735.4-201ENSMUST00000227460 1944 ntBASIC10.74□□□□□ -0.69
Hoxd3P09027 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Hoxd3P09027 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Hoxd3P09027 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC10.74□□□□□ -0.69
Hoxd3P09027 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC10.74□□□□□ -0.69
Hoxd3P09027 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Mir6392-201ENSMUST00000184924 108 ntBASIC10.74□□□□□ -0.69
Hoxd3P09027 Gm29107-201ENSMUST00000190910 347 ntBASIC10.74□□□□□ -0.69
Hoxd3P09027 Ighv1-51-201ENSMUST00000192903 354 ntBASIC10.74□□□□□ -0.69
Hoxd3P09027 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Gm5279-201ENSMUST00000199575 745 ntBASIC10.74□□□□□ -0.69
Hoxd3P09027 2900064F13Rik-201ENSMUST00000202166 1008 ntBASIC10.74□□□□□ -0.69
Hoxd3P09027 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC10.74□□□□□ -0.69
Hoxd3P09027 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC10.74□□□□□ -0.69
Hoxd3P09027 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC10.74□□□□□ -0.69
Hoxd3P09027 AC149294.4-201ENSMUST00000227870 882 ntBASIC10.74□□□□□ -0.69
Hoxd3P09027 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
Hoxd3P09027 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC10.74□□□□□ -0.69
Hoxd3P09027 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Hoxd3P09027 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Hoxd3P09027 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hoxd3P09027 Gm9347-201ENSMUST00000211473 1607 ntBASIC10.73□□□□□ -0.69
Hoxd3P09027 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Gm37411-201ENSMUST00000194180 2282 ntBASIC10.73□□□□□ -0.69
Hoxd3P09027 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Hoxd3P09027 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Gm649-201ENSMUST00000117284 1054 ntBASIC10.73□□□□□ -0.69
Hoxd3P09027 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hoxd3P09027 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC10.73□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms