Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC11.35□□□□□ -0.59
Hmgb3O54879 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC11.35□□□□□ -0.59
Hmgb3O54879 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Hmgb3O54879 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Hmgb3O54879 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Hmgb3O54879 Gm37230-201ENSMUST00000194491 818 ntBASIC11.35□□□□□ -0.59
Hmgb3O54879 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC11.35□□□□□ -0.59
Hmgb3O54879 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC11.35□□□□□ -0.59
Hmgb3O54879 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Hmgb3O54879 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC11.35□□□□□ -0.59
Hmgb3O54879 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Gm18856-201ENSMUST00000178096 1374 ntBASIC11.35□□□□□ -0.59
Hmgb3O54879 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC11.35□□□□□ -0.59
Hmgb3O54879 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Hmgb3O54879 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC11.35□□□□□ -0.59
Hmgb3O54879 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 AC115735.4-201ENSMUST00000227460 1944 ntBASIC11.35□□□□□ -0.59
Hmgb3O54879 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Hmgb3O54879 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC11.34□□□□□ -0.59
Hmgb3O54879 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Hmgb3O54879 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Hmgb3O54879 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Hmgb3O54879 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Hmgb3O54879 Cep250-202ENSMUST00000094421 7919 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Tns1-201ENSMUST00000169786 9966 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC11.33□□□□□ -0.6
Hmgb3O54879 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Ar-201ENSMUST00000052837 10048 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 188.4 ms