Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm29032-201ENSMUST00000189797 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm28695-201ENSMUST00000190300 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm37448-201ENSMUST00000192795 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Gm13600-201ENSMUST00000117949 744 ntBASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Gm21027-201ENSMUST00000219300 1236 ntBASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Scn4aQ9ER60 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm7851-201ENSMUST00000117574 323 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm28324-201ENSMUST00000187913 264 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm37411-201ENSMUST00000194180 2282 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm45242-201ENSMUST00000210666 2129 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm7789-202ENSMUST00000211273 1400 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm11246-201ENSMUST00000120880 345 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm10731-201ENSMUST00000181171 448 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm27627-201ENSMUST00000183644 150 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm5621-201ENSMUST00000187303 640 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm38092-201ENSMUST00000195600 653 ntBASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn4aQ9ER60 Gm12058-201ENSMUST00000118614 437 ntBASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Gm45120-201ENSMUST00000208880 408 ntBASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Ginm1-202ENSMUST00000065124 300 ntBASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Scn4aQ9ER60 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Mir1956-201ENSMUST00000157748 65 ntBASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Gm6867-201ENSMUST00000219165 425 ntBASIC18.21■□□□□ 0.51
Scn4aQ9ER60 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms