Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc9Q8VC31 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc9Q8VC31 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc9Q8VC31 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Ccdc9Q8VC31 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc9Q8VC31 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc9Q8VC31 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Vti1a-206ENSMUST00000225529 1244 ntBASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Nupl1-206ENSMUST00000225111 2936 ntBASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc9Q8VC31 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Gm43721-201ENSMUST00000199677 2313 ntBASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Gm12497-201ENSMUST00000138778 237 ntBASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Gm6157-201ENSMUST00000199935 1897 ntBASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC16.5■□□□□ 0.23
Ccdc9Q8VC31 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm4609-201ENSMUST00000106443 1002 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm5138-201ENSMUST00000113842 1002 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm15191-201ENSMUST00000117933 1000 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm12182-201ENSMUST00000118655 1008 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm13882-201ENSMUST00000120886 1002 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm10284-201ENSMUST00000145057 1005 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm25745-201ENSMUST00000174945 133 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm10481-201ENSMUST00000179228 1002 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm2574-201ENSMUST00000181051 1002 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm3200-201ENSMUST00000181493 1002 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm8825-201ENSMUST00000182565 998 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm4518-201ENSMUST00000182638 718 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm8330-201ENSMUST00000182754 1008 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm4575-201ENSMUST00000182991 1002 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm8709-201ENSMUST00000183230 1012 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm10293-201ENSMUST00000076317 1002 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gm6316-201ENSMUST00000082064 1020 ntBASIC16.49■□□□□ 0.23
Ccdc9Q8VC31 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms