Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Gm42769-201ENSMUST00000198576 1659 ntBASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Gm2423-201ENSMUST00000074863 733 ntBASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Brf1Q8CFK2 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Brf1Q8CFK2 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Brf1Q8CFK2 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Brf1Q8CFK2 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Brf1Q8CFK2 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Brf1Q8CFK2 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Brf1Q8CFK2 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Brf1Q8CFK2 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Brf1Q8CFK2 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
Brf1Q8CFK2 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Gm25925-201ENSMUST00000158314 306 ntBASIC16.58■□□□□ 0.24
Brf1Q8CFK2 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Mir6977-201ENSMUST00000184960 64 ntBASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 AC131997.1-201ENSMUST00000228611 1229 ntBASIC16.58■□□□□ 0.24
Brf1Q8CFK2 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Gm37015-201ENSMUST00000192763 1521 ntBASIC16.58■□□□□ 0.24
Brf1Q8CFK2 AC161252.3-201ENSMUST00000225465 1549 ntBASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Gm20632-201ENSMUST00000176760 2427 ntBASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Brf1Q8CFK2 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Syt7-205ENSMUST00000224135 1557 ntBASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Ldb3-207ENSMUST00000227819 1499 ntBASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Gm27437-201ENSMUST00000183429 107 ntBASIC16.57■□□□□ 0.24
Brf1Q8CFK2 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Gm31326-201ENSMUST00000191856 1048 ntBASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Gm44719-201ENSMUST00000206404 149 ntBASIC16.57■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms