Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Usp47Q8BY87 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usp47Q8BY87 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Usp47Q8BY87 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Gm44799-201ENSMUST00000207639 1202 ntBASIC19.28■□□□□ 0.68
Usp47Q8BY87 Gm7561-201ENSMUST00000211203 886 ntBASIC19.28■□□□□ 0.68
Usp47Q8BY87 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp47Q8BY87 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
Usp47Q8BY87 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp47Q8BY87 AC159649.2-201ENSMUST00000222984 3223 ntBASIC19.27■□□□□ 0.68
Usp47Q8BY87 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp47Q8BY87 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
Usp47Q8BY87 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Usp47Q8BY87 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Usp47Q8BY87 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp47Q8BY87 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp47Q8BY87 Gm5421-201ENSMUST00000181698 2354 ntBASIC19.26■□□□□ 0.67
Usp47Q8BY87 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Gm4984-201ENSMUST00000115987 360 ntBASIC19.26■□□□□ 0.67
Usp47Q8BY87 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Gm27486-201ENSMUST00000184923 80 ntBASIC19.26■□□□□ 0.67
Usp47Q8BY87 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Itm2b-204ENSMUST00000228637 783 ntBASIC19.26■□□□□ 0.67
Usp47Q8BY87 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Gm25857-201ENSMUST00000082788 129 ntBASIC19.26■□□□□ 0.67
Usp47Q8BY87 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp47Q8BY87 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp47Q8BY87 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp47Q8BY87 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp47Q8BY87 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp47Q8BY87 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms