Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp40Q8BWR4 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Gm2639-201ENSMUST00000156881 1297 ntBASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Gm4271-201ENSMUST00000174444 973 ntBASIC18.75■□□□□ 0.59
Usp40Q8BWR4 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Gm27682-201ENSMUST00000183930 110 ntBASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp40Q8BWR4 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Gm5370-201ENSMUST00000187187 574 ntBASIC18.74■□□□□ 0.59
Usp40Q8BWR4 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp40Q8BWR4 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Gm10339-203ENSMUST00000225409 1671 ntBASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Gm8399-201ENSMUST00000082300 1117 ntBASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp40Q8BWR4 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Gm13369-201ENSMUST00000119442 987 ntBASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Gm27572-201ENSMUST00000183702 255 ntBASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms