Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC12.47□□□□□ -0.41
Usf1Q61069 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 AC121801.1-201ENSMUST00000225363 1899 ntBASIC12.47□□□□□ -0.41
Usf1Q61069 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Usf1Q61069 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Mir686-201ENSMUST00000102174 109 ntBASIC12.47□□□□□ -0.41
Usf1Q61069 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC12.47□□□□□ -0.41
Usf1Q61069 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC12.47□□□□□ -0.41
Usf1Q61069 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC12.47□□□□□ -0.41
Usf1Q61069 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Usf1Q61069 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC12.47□□□□□ -0.41
Usf1Q61069 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC12.47□□□□□ -0.41
Usf1Q61069 Rn7sk-201ENSMUST00000083103 331 ntBASIC12.47□□□□□ -0.41
Usf1Q61069 Gm26315-201ENSMUST00000083890 321 ntBASIC12.47□□□□□ -0.41
Usf1Q61069 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Usf1Q61069 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
Usf1Q61069 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usf1Q61069 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC12.46□□□□□ -0.41
Usf1Q61069 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC12.46□□□□□ -0.41
Usf1Q61069 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Carlr-201ENSMUST00000181515 2574 ntBASIC12.46□□□□□ -0.41
Usf1Q61069 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC12.46□□□□□ -0.41
Usf1Q61069 Gm7993-201ENSMUST00000200970 1384 ntBASIC12.46□□□□□ -0.41
Usf1Q61069 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
Usf1Q61069 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Usf1Q61069 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC12.46□□□□□ -0.41
Usf1Q61069 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Usf1Q61069 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC12.46□□□□□ -0.41
Usf1Q61069 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Usf1Q61069 Gm25927-201ENSMUST00000175058 117 ntBASIC12.46□□□□□ -0.41
Usf1Q61069 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC12.46□□□□□ -0.41
Usf1Q61069 Gm29396-201ENSMUST00000185659 716 ntBASIC12.46□□□□□ -0.41
Usf1Q61069 Gm38000-201ENSMUST00000192390 1215 ntBASIC12.46□□□□□ -0.41
Usf1Q61069 Gm38144-201ENSMUST00000192790 465 ntBASIC12.46□□□□□ -0.41
Usf1Q61069 Gm37922-201ENSMUST00000195596 455 ntBASIC12.46□□□□□ -0.41
Usf1Q61069 Gm37497-201ENSMUST00000195830 798 ntBASIC12.46□□□□□ -0.41
Usf1Q61069 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC12.46□□□□□ -0.41
Usf1Q61069 Gm6334-201ENSMUST00000207083 228 ntBASIC12.46□□□□□ -0.41
Usf1Q61069 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Usf1Q61069 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Usf1Q61069 Gm45630-201ENSMUST00000210243 1911 ntBASIC12.46□□□□□ -0.42
Usf1Q61069 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Usf1Q61069 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Usf1Q61069 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Usf1Q61069 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Usf1Q61069 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Usf1Q61069 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Usf1Q61069 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Usf1Q61069 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Usf1Q61069 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Usf1Q61069 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC12.45□□□□□ -0.42
Usf1Q61069 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC12.45□□□□□ -0.42
Usf1Q61069 Gm6159-201ENSMUST00000191249 1724 ntBASIC12.45□□□□□ -0.42
Usf1Q61069 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Usf1Q61069 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.45□□□□□ -0.42
Usf1Q61069 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Usf1Q61069 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Usf1Q61069 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC12.45□□□□□ -0.42
Usf1Q61069 Gm9755-201ENSMUST00000032981 1356 ntBASIC12.45□□□□□ -0.42
Usf1Q61069 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Usf1Q61069 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC12.45□□□□□ -0.42
Usf1Q61069 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms