Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Gm25016-201ENSMUST00000158399 131 ntBASIC14.31□□□□□ -0.12
Rnf40Q3U319 Gm2445-201ENSMUST00000182798 989 ntBASIC14.31□□□□□ -0.12
Rnf40Q3U319 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Gm45747-201ENSMUST00000212203 999 ntBASIC14.31□□□□□ -0.12
Rnf40Q3U319 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 AC164702.1-201ENSMUST00000220135 2212 ntBASIC14.31□□□□□ -0.12
Rnf40Q3U319 Nudt18-202ENSMUST00000228554 3619 ntBASIC14.31□□□□□ -0.12
Rnf40Q3U319 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Gm43435-201ENSMUST00000199996 1438 ntBASIC14.31□□□□□ -0.12
Rnf40Q3U319 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf40Q3U319 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC14.31□□□□□ -0.12
Rnf40Q3U319 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC14.3□□□□□ -0.12
Rnf40Q3U319 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Gm7049-201ENSMUST00000223520 1712 ntBASIC14.3□□□□□ -0.12
Rnf40Q3U319 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Gm10327-201ENSMUST00000105222 1002 ntBASIC14.3□□□□□ -0.12
Rnf40Q3U319 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Gm15372-201ENSMUST00000120729 834 ntBASIC14.3□□□□□ -0.12
Rnf40Q3U319 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.3□□□□□ -0.12
Rnf40Q3U319 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Gm10275-202ENSMUST00000168697 495 ntBASIC14.3□□□□□ -0.12
Rnf40Q3U319 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.3□□□□□ -0.12
Rnf40Q3U319 Gm33142-201ENSMUST00000193913 867 ntBASIC14.3□□□□□ -0.12
Rnf40Q3U319 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Gm10275-201ENSMUST00000092620 635 ntBASIC14.3□□□□□ -0.12
Rnf40Q3U319 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf40Q3U319 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Gm5682-201ENSMUST00000173402 505 ntBASIC14.29□□□□□ -0.12
Rnf40Q3U319 Gm42919-201ENSMUST00000197753 1284 ntBASIC14.29□□□□□ -0.12
Rnf40Q3U319 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Gm45166-201ENSMUST00000209073 683 ntBASIC14.29□□□□□ -0.12
Rnf40Q3U319 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms