Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC14.14□□□□□ -0.15
Sox9Q04887 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC14.14□□□□□ -0.15
Sox9Q04887 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Mir5120-201ENSMUST00000175020 78 ntBASIC14.14□□□□□ -0.15
Sox9Q04887 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC14.14□□□□□ -0.15
Sox9Q04887 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC14.14□□□□□ -0.15
Sox9Q04887 AC073947.2-201ENSMUST00000215888 1130 ntBASIC14.14□□□□□ -0.15
Sox9Q04887 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC14.14□□□□□ -0.15
Sox9Q04887 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.14□□□□□ -0.15
Sox9Q04887 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC14.14□□□□□ -0.15
Sox9Q04887 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Sox9Q04887 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Gm45760-201ENSMUST00000212190 1782 ntBASIC14.14□□□□□ -0.15
Sox9Q04887 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Gm43579-201ENSMUST00000202387 1307 ntBASIC14.14□□□□□ -0.15
Sox9Q04887 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
Sox9Q04887 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Sox9Q04887 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
Sox9Q04887 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Gm3756-201ENSMUST00000169182 1355 ntBASIC14.13□□□□□ -0.15
Sox9Q04887 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Sox9Q04887 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.13□□□□□ -0.15
Sox9Q04887 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC14.13□□□□□ -0.15
Sox9Q04887 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC14.13□□□□□ -0.15
Sox9Q04887 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Mospd4-201ENSMUST00000180618 576 ntBASIC14.13□□□□□ -0.15
Sox9Q04887 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC14.13□□□□□ -0.15
Sox9Q04887 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC14.13□□□□□ -0.15
Sox9Q04887 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC14.13□□□□□ -0.15
Sox9Q04887 AC122371.3-201ENSMUST00000223402 1061 ntBASIC14.13□□□□□ -0.15
Sox9Q04887 AC102291.3-201ENSMUST00000226566 405 ntBASIC14.13□□□□□ -0.15
Sox9Q04887 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC14.13□□□□□ -0.15
Sox9Q04887 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Sox9Q04887 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Sox9Q04887 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sox9Q04887 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sox9Q04887 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Sox9Q04887 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sox9Q04887 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Sox9Q04887 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sox9Q04887 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
Sox9Q04887 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Sox9Q04887 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Sox9Q04887 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sox9Q04887 Gm4909-201ENSMUST00000118749 794 ntBASIC14.12□□□□□ -0.15
Sox9Q04887 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC14.12□□□□□ -0.15
Sox9Q04887 Gm6222-202ENSMUST00000182143 629 ntBASIC14.12□□□□□ -0.15
Sox9Q04887 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC14.12□□□□□ -0.15
Sox9Q04887 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC14.12□□□□□ -0.15
Sox9Q04887 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Sox9Q04887 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC14.12□□□□□ -0.15
Sox9Q04887 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sox9Q04887 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sox9Q04887 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Sox9Q04887 n-R5s195-201ENSMUST00000082891 119 ntBASIC14.12□□□□□ -0.15
Sox9Q04887 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sox9Q04887 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sox9Q04887 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms