Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Gm11839-201ENSMUST00000120647 1953 ntBASIC11.72□□□□□ -0.53
Col8a1Q00780 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Gm9252-201ENSMUST00000172364 1602 ntBASIC11.71□□□□□ -0.53
Col8a1Q00780 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Col8a1Q00780 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.53
Col8a1Q00780 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Col8a1Q00780 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Col8a1Q00780 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Gm15957-201ENSMUST00000118893 974 ntBASIC11.71□□□□□ -0.53
Col8a1Q00780 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Col8a1Q00780 Gm1335-201ENSMUST00000121653 386 ntBASIC11.71□□□□□ -0.53
Col8a1Q00780 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC11.71□□□□□ -0.53
Col8a1Q00780 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC11.71□□□□□ -0.53
Col8a1Q00780 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC11.71□□□□□ -0.53
Col8a1Q00780 Gm7118-201ENSMUST00000200167 1003 ntBASIC11.71□□□□□ -0.53
Col8a1Q00780 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC11.71□□□□□ -0.53
Col8a1Q00780 Gm29705-201ENSMUST00000212598 474 ntBASIC11.71□□□□□ -0.53
Col8a1Q00780 Gm18935-201ENSMUST00000212692 664 ntBASIC11.71□□□□□ -0.53
Col8a1Q00780 Gm17823-201ENSMUST00000217830 1006 ntBASIC11.71□□□□□ -0.53
Col8a1Q00780 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Col8a1Q00780 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col8a1Q00780 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC11.71□□□□□ -0.54
Col8a1Q00780 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col8a1Q00780 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col8a1Q00780 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col8a1Q00780 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col8a1Q00780 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col8a1Q00780 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.54
Col8a1Q00780 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col8a1Q00780 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Col8a1Q00780 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Col8a1Q00780 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Col8a1Q00780 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC11.7□□□□□ -0.54
Col8a1Q00780 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Ighv1-62-201ENSMUST00000193406 350 ntBASIC11.7□□□□□ -0.54
Col8a1Q00780 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Gm45865-201ENSMUST00000211815 945 ntBASIC11.7□□□□□ -0.54
Col8a1Q00780 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC11.7□□□□□ -0.54
Col8a1Q00780 Gm8598-201ENSMUST00000221184 836 ntBASIC11.7□□□□□ -0.54
Col8a1Q00780 AC133598.1-201ENSMUST00000224327 660 ntBASIC11.7□□□□□ -0.54
Col8a1Q00780 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Col8a1Q00780 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col8a1Q00780 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms