Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Gm9115-201ENSMUST00000120192 1348 ntBASIC16.22■□□□□ 0.19
Trim56Q80VI1 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Gm30238-201ENSMUST00000195528 2603 ntBASIC16.22■□□□□ 0.19
Trim56Q80VI1 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Gm45059-201ENSMUST00000205558 1077 ntBASIC16.22■□□□□ 0.19
Trim56Q80VI1 Gm7653-201ENSMUST00000214567 508 ntBASIC16.22■□□□□ 0.19
Trim56Q80VI1 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim56Q80VI1 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 AC166491.1-201ENSMUST00000227053 2308 ntBASIC16.21■□□□□ 0.19
Trim56Q80VI1 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Gm11424-201ENSMUST00000121929 829 ntBASIC16.21■□□□□ 0.19
Trim56Q80VI1 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC16.21■□□□□ 0.19
Trim56Q80VI1 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Gm7446-201ENSMUST00000221035 1240 ntBASIC16.21■□□□□ 0.19
Trim56Q80VI1 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Gm24447-201ENSMUST00000083977 338 ntBASIC16.21■□□□□ 0.19
Trim56Q80VI1 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim56Q80VI1 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC16.21■□□□□ 0.18
Trim56Q80VI1 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Trim56Q80VI1 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Trim56Q80VI1 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.18
Trim56Q80VI1 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.2■□□□□ 0.18
Trim56Q80VI1 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Gm37133-201ENSMUST00000192705 1922 ntBASIC16.2■□□□□ 0.18
Trim56Q80VI1 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC16.2■□□□□ 0.18
Trim56Q80VI1 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Gm5161-201ENSMUST00000075243 853 ntBASIC16.2■□□□□ 0.18
Trim56Q80VI1 Gm19863-201ENSMUST00000192480 2218 ntBASIC16.2■□□□□ 0.18
Trim56Q80VI1 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim56Q80VI1 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms