Protein–RNA interactions for Protein: Q6IFX4

Krt39, Keratin, type I cytoskeletal 39, mousemouse

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt39Q6IFX4 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 AC154725.1-201ENSMUST00000224826 1961 ntBASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Gm37714-201ENSMUST00000194742 342 ntBASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Gm18049-201ENSMUST00000208909 581 ntBASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Krt39Q6IFX4 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Gm29541-201ENSMUST00000191351 678 ntBASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Krt39Q6IFX4 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Mir6990-201ENSMUST00000183724 91 ntBASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Gm18766-201ENSMUST00000189811 808 ntBASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Gm38577-201ENSMUST00000221531 4545 ntBASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Krt39Q6IFX4 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Krt39Q6IFX4 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Krt39Q6IFX4 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Krt39Q6IFX4 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Krt39Q6IFX4 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms